Pumpkin Cheesecake Snickerdoodle Muffins Recipe
Introduction
These Pumpkin Cheesecake Snickerdoodle Muffins combine the warm spices of fall with creamy cheesecake filling and a sweet cinnamon sugar topping. Perfect for breakfast or a cozy snack, they are moist, flavorful, and sure to become a seasonal favorite.

Ingredients
- 4 ounces cream cheese, at room temperature
- 1/2 cup powdered sugar
- 2 cups (9 ounces or 255 grams) white whole wheat flour
- 1 teaspoon baking soda
- ½ teaspoon fine sea salt
- 1 teaspoon ground cinnamon
- ½ teaspoon ground cloves
- ½ teaspoon ground nutmeg
- 3/4 cup packed dark brown sugar
- 3 tablespoons unsulphered molasses
- 1/4 cup applesauce
- 2 large eggs
- 1 cup canned pumpkin puree
- 1 teaspoon vanilla extract
- 3/4 cup buttermilk
- 1/2 cup granulated sugar
- ½ teaspoon ground cinnamon (for topping)
- 2 tablespoons butter, melted and cooled
Instructions
- Step 1: To make the filling, use an electric mixer to beat the cream cheese and powdered sugar until very well combined and smooth. Refrigerate while making the muffins so the cream cheese firms up.
- Step 2: Preheat the oven to 400°F. Prepare two 12-cup muffin tins by coating with cooking spray or lining with paper liners.
- Step 3: In a medium bowl, whisk together the flour, baking soda, salt, 1 teaspoon cinnamon, cloves, and nutmeg.
- Step 4: In a large bowl, whisk the brown sugar, molasses, applesauce, and eggs until well combined. Add the pumpkin puree and vanilla, whisking until smooth.
- Step 5: Add the flour mixture and buttermilk to the wet ingredients in two alternating batches, mixing gently each time. Be careful not to overmix.
- Step 6: Spoon 1 to 2 tablespoons of batter into the bottom of each muffin cup to cover the base. Add a heaping teaspoon of the cream cheese filling on top of the batter in each cup.
- Step 7: Fill each muffin cup with the remaining batter, covering the cream cheese layer completely.
- Step 8: Bake the muffins for 20 minutes. Allow them to cool on a wire rack for 15 minutes before removing from the tins to cool completely.
- Step 9: To make the topping, combine the granulated sugar and ½ teaspoon cinnamon in a small bowl. Dip the top of each muffin in the melted butter, then roll in the cinnamon sugar mixture to coat.
Tips & Variations
- Use full-fat cream cheese for a richer filling and better texture.
- White whole wheat flour adds a nutty flavor and keeps the muffins lighter than regular whole wheat.
- Substitute canned pumpkin with fresh pumpkin puree if you prefer.
- For a vegan version, try using a dairy-free cream cheese and buttermilk substitute.
- Add chopped pecans or walnuts to the batter for extra crunch.
Storage
Store these muffins in an airtight container in the refrigerator for up to 4 days. They can also be frozen for up to 2 months—thaw at room temperature before serving. Reheat briefly in the microwave or oven to restore their fresh-baked warmth.
How to Serve
Serve this delicious recipe with your favorite sides.
FAQs
Can I make these muffins without cream cheese?
The cream cheese provides a rich, tangy filling that makes these muffins special. Omitting it will change the texture and flavor. However, you could bake the muffins without the filling for a simpler pumpkin snack muffin.
Do I need to use buttermilk? Can I substitute something else?
Buttermilk adds acidity and moisture, enhancing the muffin’s tenderness. If you don’t have buttermilk, you can substitute with regular milk mixed with 1 tablespoon of lemon juice or vinegar, left to sit for 5 minutes before using.
